Datasetranked_basal_vs_classical
PhenotypeNoPhenotypeAvailable
Upregulated in classna_pos
GeneSetBETA1 INTEGRIN CELL SURFACE INTERACTIONS%PATHWAY INTERACTION DATABASE NCI-NATURE CURATED DATA%BETA1 INTEGRIN CELL SURFACE INTERACTIONS
Enrichment Score (ES)0.69721144
Normalized Enrichment Score (NES)2.0844796
Nominal p-value0.0
FDR q-value0.0011537474
FWER p-Value0.009
Table: GSEA Results Summary



Fig 1: Enrichment plot: BETA1 INTEGRIN CELL SURFACE INTERACTIONS%PATHWAY INTERACTION DATABASE NCI-NATURE CURATED DATA%BETA1 INTEGRIN CELL SURFACE INTERACTIONS   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1TGM22516.1210.0769Yes
2PLAU4013.7530.1429Yes
3TGFBI5312.4630.2027Yes
4LAMC21049.9210.2481Yes
5COL7A11139.6910.2947Yes
6ITGA31179.5680.3410Yes
7COL6A12896.3590.3624Yes
8ITGB13815.6510.3847Yes
9FN14235.3560.4085Yes
10ITGA54784.9830.4296Yes
11LAMB15704.4730.4463Yes
12LAMA36124.2910.4649Yes
13COL6A36374.1930.4839Yes
14LAMA56404.1780.5041Yes
15COL6A26614.0980.5228Yes
16ITGAV7543.8080.5362Yes
17COL1A17783.7410.5531Yes
18COL3A18013.6890.5698Yes
19COL5A18063.6700.5874Yes
20COL18A18853.4540.5998Yes
21COL1A28893.4460.6164Yes
22LAMA49453.3190.6294Yes
23THBS110533.1250.6386Yes
24LAMC111572.9320.6471Yes
25COL5A211812.8950.6599Yes
26COL11A112632.7660.6688Yes
27LAMB313452.6410.6772Yes
28TNC13802.5890.6878Yes
29NID116702.1850.6824Yes
30COL4A516982.1490.6913Yes
31LAMA119091.9690.6892Yes
32THBS220451.8480.6906Yes
33COL2A121231.7830.6950Yes
34VCAM122331.7070.6972Yes
35COL4A125351.5200.6878No
36PLAUR25881.4910.6922No
37ITGA230671.2420.6716No
38VEGFA31781.1940.6713No
39FBN132181.1760.6748No
40ITGA632511.1600.6787No
41CSPG433391.1260.6793No
42LAMB233751.1140.6828No
43FGG39580.8800.6546No
44COL4A441240.8190.6494No
45ITGA1150030.5720.6033No
46FGA54930.4610.5783No
47FGB56970.4130.5690No
48SPP159780.3610.5552No
49LAMA267750.2410.5121No
50ITGA471620.1870.4915No
51JAM277790.1110.4577No
52CD8178390.1050.4550No
53F13A179370.0970.4500No
54COL4A381070.0800.4410No
55CD1482970.0620.4308No
56ITGA110268-0.1460.3218No
57COL4A610485-0.1740.3107No
58MDK10881-0.2280.2898No
59ITGA811039-0.2510.2823No
60ITGA713453-0.7510.1516No
61IGSF814507-1.1340.0985No
62ITGA1014531-1.1420.1027No
63ITGA915801-1.8980.0413No
64VTN16550-2.7810.0132No
65NPNT17306-4.621-0.0064No
66COL11A217871-9.6000.0088No
Table: GSEA details [plain text format]



Fig 2: BETA1 INTEGRIN CELL SURFACE INTERACTIONS%PATHWAY INTERACTION DATABASE NCI-NATURE CURATED DATA%BETA1 INTEGRIN CELL SURFACE INTERACTIONS: Random ES distribution   
Gene set null distribution of ES for BETA1 INTEGRIN CELL SURFACE INTERACTIONS%PATHWAY INTERACTION DATABASE NCI-NATURE CURATED DATA%BETA1 INTEGRIN CELL SURFACE INTERACTIONS